/***************************************************************************
 *   Copyright (C) 2007 by Alexandre Masselot,,,   *
 *   alex@alex-laptop   *
 *                                                                         *
 *   This program is free software; you can redistribute it and/or modify  *
 *   it under the terms of the GNU Library General Public License as       *
 *   published by the Free Software Foundation; either version 2 of the    *
 *   License, or (at your option) any later version.                       *
 *                                                                         *
 *   This program is distributed in the hope that it will be useful,       *
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of        *
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the         *
 *   GNU General Public License for more details.                          *
 *                                                                         *
 *   You should have received a copy of the GNU Library General Public     *
 *   License along with this program; if not, write to the                 *
 *   Free Software Foundation, Inc.,                                       *
 *   59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.             *
 ***************************************************************************/
#include "peptidepmf.h"

namespace bol{
PeptidePMF::PeptidePMF()
 : Peptide()
{
}


PeptidePMF::~PeptidePMF()
{
}


double PeptidePMF::getMass()const{
  double m=Peptide::getMass();
  for (int i=0; i<m_vModif.size(); i++){
    m+=m_vNbModif[i]*m_vModif[i]->deltaMass();
  }
  return m;
}

void PeptidePMF::setModif(Modification* m, const int n){
  m_vNbModif.push_back(n);
  m_vModif.push_back(m);
}

void PeptidePMF::addModif(Modification* m, const int n){
  for (int i=0; i<m_vModif.size(); i++){
      if(m_vModif[i]==m){
         m_vNbModif[i]+=n;
         return;
      }
  }
  m_vNbModif.push_back(n);
  m_vModif.push_back(m);

}
}

